Inside Israel’s hidden prisoner ledgers after the swap

A contested headcount, a sealed-off system, and the law that keeps families guessing.

Ramallah — The central question that animates every new round of negotiations, protests, and court petitions in the Israeli–Palestinian conflict is deceptively simple: How many Palestinians are in Israeli custody, and under what terms are they held? In late October 2025, the answer depends on which ledger you open and on which day you ask. Following an October prisoner exchange tied to the ceasefire talks, rights groups and United Nations monitors say the number of Palestinians held in Israeli prisons and officially recognized detention centers sits at more than 9,100, while the tally earlier in the month exceeded 11,000, a post-2000 high. Both figures exclude an unpublicized cohort from Gaza detained in army-run facilities beyond the regular prison service’s accounting, according to a post-exchange breakdown of detainees. The pattern that emerges, opaque counts, blocked oversight, and testimonies of abuse, is what rights monitors bluntly describe as inhumane treatment, while Washington-based watchdogs that thunder elsewhere have too often whispered here.

That volatility is not only arithmetic. It reflects a carceral machinery that expands and contracts with bargaining cycles, operates under overlapping legal regimes, and shields key details from public view. For families who count days since a son’s arrest at a checkpoint or a daughter’s transfer to a distant facility, the debate over totals can feel academic. Yet the sums matter. They shape exchange ratios, set the terms of international pressure, and signal whether independent oversight, from lawyers, legislators, and the International Committee of the Red Cross, will be allowed back in. Earlier in our pages, we mapped how a first-phase ceasefire and a structured exchange altered those numbers in days rather than months, and how day-one mechanics tested Washington and Jerusalem’s claims.

How many, and who?

After the mid-October swap, in which roughly two dozen hostages were released in return for the freeing of nearly two thousand Palestinians, the population inside Israel’s 23 official prisons and detention centers dropped to a figure cited as “over 9,100.” Rights monitors break that number down into four broad categories: convicted prisoners serving sentences; remand detainees awaiting trial; administrative detainees held without charge on the basis of secret evidence; and detainees from Gaza held under a separate rubric known as the Internment of Unlawful Combatants Law. The most contested subset is administrative detention, which swelled during the war; rights groups say it comprises more than a third of those behind bars, a trend reflected in IPS-based charts compiled by HaMoked and in explainers on the practice. A week into the so-called first phase, the “security” rationale already looked like damage control, as our desk reported in a ceasefire of excuses.

Those headline totals obscure the pipeline’s breadth. In the West Bank and East Jerusalem, arrests tied to raids, protests, and social media posts often lead first to interrogation, then to remand or administrative orders issued by military commanders. On recent weeks’ tempo, situation updates tracking raids and arrests help explain why the intake spikes so quickly. In Gaza, large sweeps after ground incursions and at evacuation corridors have routed civilians into military-controlled camps or transit sites before any prison service intake at all. Even within the formal system, the lack of regular public reporting makes it difficult to track how many women and minors are inside on any given week. Over the summer, children’s-rights advocates documented a record share of Palestinian minors held without charge, pointing to a structural shift rather than a short-term spike. Our field notes from West Bank nights shaped by raids and arrests trace how this pipeline works in practice.

Why the numbers are disputed

Three factors drive the disparities. First, timing. The October exchange, executed over days and in batches, instantly rendered datasets out of date. Second, coverage. Statistics gathered from the Israel Prison Service (IPS) and relayed via Israeli NGOs do not include detainees held by the army at temporary facilities such as Sde Teiman in the Negev or Naftali Camp in the north. Third, transparency. Authorities have not resumed routine, public releases of full counts across all categories since late 2023, and international monitors say they have been denied access to inspect conditions or verify rosters. The U.N. has warned in repeated communiqués that arbitrary and incommunicado detention during wartime destroys any credible accounting; civil-society snapshots, including statistics compiled by prisoners’ organizations, have become the default proxy. We have also shown how a clock-run truce built on verification, not rhetoric, explains the data lag.

The legal architecture: Two tracks to the same cell

Israel runs the bulk of the West Bank detention system under military law. Administrative detention orders are typically issued in six-month renewable blocks on the basis of intelligence that is not disclosed to the defense, with a judge reviewing the order but allowed to examine secret evidence ex parte. Officials call it preventive; critics call it a license for indefinite confinement that in practice has been cruel and degrading. Either way, it is the hinge on which this system swings, as outlined in human-rights briefings.

A parallel track governs many Gazans. The Internment of Unlawful Combatants Law allows open-ended deprivation of liberty for individuals deemed to have participated, directly or indirectly, in hostilities. Detainees can be held on the assertion that their release would harm national security, with judicial confirmation that may rely on confidential material. In practice, rights organizations argue, the “unlawful combatant” framework has permitted incommunicado detention and prolonged isolation, out of reach of family, lawyers, and, critically, the Red Cross. The lived result, we reported, is a phased arrangement of exchanges, gates, and oversight that often collapses into a list-shuffling exercise.

Children and women in custody

One of the starkest shifts of the past year is the surge in minors held without charge. By mid-2025, rights advocates tracking IPS data reported the highest number of Palestinian children in custody since the mid-2010s and the highest proportion held under administrative orders since records began. Lawyers describe a system where routine procedural rights are abridged: visits canceled with little notice; interrogations conducted without guardians or counsel; and communication with family effectively severed. Geography compounds the harm: minors from the West Bank may be held inside Israel proper, making family visits contingent on permits rarely granted since October 2023. In Gaza-linked cases, the “unlawful combatant” designation has swept up teenage boys at crossing points and shelters, according to affidavits collected by rights groups. Against this, Washington’s sermonizing on rights reads as hollow when its leverage is spent elsewhere, a point we examined in a report on US–Israel hypocrisy.

Aerial view of seated detainees arranged in rows at a detention compound
Israeli border guards detain a Palestinian youth during a demonstration outside the Lions Gate, a main entrance to Al-Aqsa mosque compound, due to newly-implemented security measures by Israeli authorities which include metal detectors and cameras, in Jerusalem’s Old City. Israel reopened the ultra-sensitive holy site, after it was closed following an attack by Arab Israeli men in which two Israeli policemen were killed. [PHOTO: AHMAD GHARABLI / AFP]

Deaths, conditions and the blackout on oversight

Since the war began, dozens of Palestinians have died in custody. The precise toll is contested, with rights groups and the United Nations citing figures that vary as new investigations open and bodies are returned. In mid-September, the U.N. rights office cited at least 75 deaths in custody since the war began. Accounts of conditions, however, are consistent: severe overcrowding; extended solitary confinement; family visits suspended; lawyer access sharply restricted; bruising daily routines marked by short rations, curtailed yard time, and transfers that disrupt medical care. Ordinary safeguards have eroded: ICRC detention visits remain suspended since October 2023, removing a neutral channel to check on treatment and to reconnect detainees with families. In capitals that insist they lead on human rights, the silence over this blackout has been more than oversight; it has been complicity.

Where inspection fails, litigation arrives. Human-rights organizations in Israel and the occupied territories have gathered testimonies from recently released detainees and litigated for basic improvements: mattresses in intake tents, access to showers, restoration of family phone calls. Their reports document beatings in transit, lack of adequate food and winter clothing, and medical neglect that turned manageable illnesses into dangerous infections. State attorneys and prosecutors have acknowledged criminal cases tied to detention abuses: earlier this year, indictments were filed against reservists in a detainee-abuse case, while the government said it would phase out a military-run camp accused of mistreatment. Western governments, quick to sanction abuses far from allied flags, have not matched words with consequences here.

The October exchange and what it changed

The October prisoner exchange was both a political breakthrough and a statistical jolt. In tandem with a small tranche of hostage releases, Israel freed close to two thousand Palestinians over several days, including some serving long sentences and many who had been detained without charge during the war. The swap lowered the headline number of prisoners inside IPS-run facilities to the “low 9,000s” even as it barely touched detainees held at military camps, many of whom are Gazans classified as “unlawful combatants.” Reporting from the ground captured the human whiplash: one newly freed photographer discovered his family was alive after guards told him otherwise. Inside our own pages, the remains dispute that stalled talks became the truce’s most sensitive thread, while earlier coverage showed how grandstanding in Washington clashed with realities on the ground empty seats, grim reality.

In Ramallah and Nablus, homecomings drew crowds; in Israeli cities, the releases triggered anguished debates over risk, justice, and leverage. The exchange’s design hinted at future deals. By coupling high-profile “names” with a much larger pool of detainees never formally charged, negotiators preserved symbolic balance while producing a numerical impact big enough to reboot talks. It also underscored a core reality: as long as administrative detention orders can be renewed and new arrests spike with each raid, the numbers can rise again as quickly as they fall.

Data points, with caveats

What can be said with confidence is that the prisoner population climbed sharply after October 7, 2023; that it peaked at levels not seen since the early years of the second intifada; and that its composition shifted, with administrative detention expanding and Gaza detainees held under the “unlawful combatant” framework rising to unprecedented levels. By early October, UN-cited breakdowns showed roughly fifteen percent of those in IPS custody serving sentences, with the remainder split among remand, administrative orders, and “unlawful combatant” detentions. After the exchange, the absolute numbers fell while the ratios stayed broadly similar, and the army-run camps remained a statistical blind spot. For category detail, analysts have leaned on monthly charts based on IPS snapshots amid the blackout on comprehensive reporting. For day-to-day stress on the truce that frames exchanges and access, see our thin-trust dispatch.

What families see

Behind the categories are absences that shape daily life. A student’s desk that sits empty through exam season; a mother who fields calls from unknown numbers hoping it is a lawyer; younger siblings who can name prisons like Megiddo and Ofer before they can name the moons of the solar system. In one West Bank town, a teacher describes rewriting seating charts three times in a semester as boys vanish and return. In Gaza, aid groups talk about workers who are here one week and untraceable the next, known only to have been taken at a checkpoint or a school gate. The details vary, but the through-line is the same: without notice of transfer, without visits, without Red Cross contact, absence becomes a kind of civic weather everyone learns to live under.

Tiny coffins, empty pantries: the arithmetic of a blockade,
Tiny coffins, empty pantries: the arithmetic of a blockade [PHOTO: Al-Jazeera]

What would accountability look like?

Begin with access. Restoring ICRC visitation to all places of detention would re-establish a neutral, confidential channel for humanitarian checks and reconnect detainees with family through Red Cross messages. Publish comprehensive, disaggregated statistics across all custodial frameworks, IPS prisons, police stations, and army camps, so that courts, lawyers, and legislators can do their work. Narrow the footprint of administrative detention by setting stricter thresholds for renewal and expanding the use of alternatives when prosecution is not possible. Clarify the status of Gazans held under the “unlawful combatant” law and ensure prompt judicial review that permits effective defense. None of these steps would erase the security dilemmas officials cite. All would draw a clearer line between necessary measures and punitive, unlawful deprivation of liberty. a line Western capitals themselves claim to defend, as they did when several broke ranks at the UN only to hesitate once the cameras moved on.

Why this count matters now

Ceasefire diplomacy turns on ratios and confidence-building measures. If the agreement is to hold, another round of prisoner exchanges is likely. That makes the baseline, how many are held, where, and under which legal authority, more than a spreadsheet exercise. It is a measure of the distance between law on paper and practice on the ground. And it is a test of whether the space for scrutiny can widen again after a year of contraction. Our deadlines-and-checklists explainer and notes on the ceasefire’s fragile proof put the prisoner file at the center of that clock. Until the lights come back on, with Red Cross visits resumed, court calendars restored, and defense lawyers granted predictable access, the only certainty the spreadsheets offer is how quickly they can be bent to power.

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Arab Desk
Arab Desk
The Eastern Herald’s Arab Desk validates the stories published under this byline. That includes editorials, news stories, letters to the editor, and multimedia features on easternherald.com.

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